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What (who) is Αr45 RNA - definition
Αr45 RNA
![Figure 1: Covariance Model in stockholm format showing the consensus structure for the αr45 family. Each of the stems represented by the structure line #=GC SS_cons is in a different color. Covariance Model in stockholm format can be downloaded [http://gps-tools2.its.yale.edu/ar45_family.pfam here.]](https://commons.wikimedia.org/wiki/Special:FilePath/C45 annotated alignment structure conservation.png?width=200 "Figure 1: Covariance Model in stockholm format showing the consensus structure for the αr45 family. Each of the stems represented by the structure line #=GC SS_cons is in a different color. Covariance Model in stockholm format can be downloaded [http://gps-tools2.its.yale.edu/ar45_family.pfam here.]")
![Figure 3: Phylogenetic distribution of known and predicted αr45 [[gene]]s. Gene numbers are based on computational analysis using the program Infernal. Legend: Smr45C = ''Sinorhizobium meliloti'' 1021 (NC_003047), Smedr45C = ''Sinorhizobium medicae'' WSM419 chromosome (NC_009636), Sfr45C = ''Sinorhizobium fredii'' NGR234 chromosome (NC_012587), Atr45C = ''Agrobacterium tumefaciens'' str. C58 chromosome linear (NC_003063), ReCIATr45C = ''Rhizobium etli'' CIAT 652 (NC_010994), Arr45C = ''Agrobacterium radiobacter'' K84 chromosome 1 (NC_011985), Rlt2304r45C = ''Rhizobium leguminosarum'' bv. trifolii WSM2304 (NC_011369), Avr45C = ''Agrobacterium vitis'' S4 chromosome 1 (NC_011989), Rlvr45C = ''Rhizobium leguminosarum'' bv. viciae 3841 (NC_008380), Rlt1325r45C = ''Rhizobium leguminosarum'' bv. trifolii WSM1325 (NC_012850), ReCFNr45C = ''Rhizobium etli'' CFN 42 (NC_007761), Mlr45C = ''Mesorhizobium loti'' MAFF303099 chromosome (NC_002678), Mcr45C = ''Mesorhizobium ciceri'' biovar biserrulae WSM1271 chromosome (NC_014923), Bcr45CII = ''Brucella canis'' ATCC 23365 chromosome II (NC_010104), Bs23445r45CII = ''Brucella suis'' ATCC 23445 chromosome II (NC_010167), Bm16Mr45CII = ''Brucella melitensis'' bv. 1 str. 16M chromosome II (NC_003318), BaS19r45CII = ''Brucella abortus'' S19 chromosome 2 (NC_010740), Bm23457r45CII = ''Brucella melitensis'' ATCC 23457 chromosome II (NC_012442), Bs1330r45CII = ''Brucella suis'' 1330 chromosome II (NC_004311), Ba19941r45CII = ''Brucella abortus'' bv. 1 str. 9-941 chromosome II (NC_006933), Bmar45CII = ''Brucella melitensis'' biovar Abortus 2308 chromosome II (NC_007624), Bor45CII = ''Brucella ovis'' ATCC 25840 chromosome II (NC_009504), Bmir45CII = ''Brucella microti'' CCM 4915 chromosome 2 (NC_013118), Oar45C = ''Brucella anthropi'' ATCC 49188 chromosome 2 (NC_009668), MsBNCr45C = ''Mesorhizobium'' sp. BNC1 (NC_008254), Bahr45C = ''Bartonella henselae'' str. Houston-1 (NC_005956), Bacr45C = ''Bartonella clarridgeiae'' 73 (NC_014932), Batr45C = ''Bartonella tribocorum'' CIP 105476 (NC_010161), Baqr45C = ''Bartonella quintana'' str. Toulouse (NC_005955), Babr45C = ''Bartonella bacilliformis'' KC583 (NC_008783), Bagr45C = ''Bartonella grahamii'' as4aup (NC_012846), Ac571r45C = ''Azorhizobium caulinodans'' ORS 571 (NC_009937), Stnr45C = ''Starkeya novella'' DSM 506 chromosome (NC_014217), Xar45C = ''Xanthobacter autotrophicus'' Py2 chromosome (NC_009720), Mesr45C = ''Methylocella silvestris'' BL2 chromosome (NC_011666), Beir45C = ''Beijerinckia indica'' subsp. indica ATCC 9039 chromosome (NC_010581), Rhpr45C = ''Rhodopseudomonas palustris'' BisA53 chromosome (NC_008435).](https://commons.wikimedia.org/wiki/Special:FilePath/C45 unrooted.png?width=200 "Figure 3: Phylogenetic distribution of known and predicted αr45 [[gene]]s. Gene numbers are based on computational analysis using the program Infernal. Legend: Smr45C = ''Sinorhizobium meliloti'' 1021 (NC_003047), Smedr45C = ''Sinorhizobium medicae'' WSM419 chromosome (NC_009636), Sfr45C = ''Sinorhizobium fredii'' NGR234 chromosome (NC_012587), Atr45C = ''Agrobacterium tumefaciens'' str. C58 chromosome linear (NC_003063), ReCIATr45C = ''Rhizobium etli'' CIAT 652 (NC_010994), Arr45C = ''Agrobacterium radiobacter'' K84 chromosome 1 (NC_011985), Rlt2304r45C = ''Rhizobium leguminosarum'' bv. trifolii WSM2304 (NC_011369), Avr45C = ''Agrobacterium vitis'' S4 chromosome 1 (NC_011989), Rlvr45C = ''Rhizobium leguminosarum'' bv. viciae 3841 (NC_008380), Rlt1325r45C = ''Rhizobium leguminosarum'' bv. trifolii WSM1325 (NC_012850), ReCFNr45C = ''Rhizobium etli'' CFN 42 (NC_007761), Mlr45C = ''Mesorhizobium loti'' MAFF303099 chromosome (NC_002678), Mcr45C = ''Mesorhizobium ciceri'' biovar biserrulae WSM1271 chromosome (NC_014923), Bcr45CII = ''Brucella canis'' ATCC 23365 chromosome II (NC_010104), Bs23445r45CII = ''Brucella suis'' ATCC 23445 chromosome II (NC_010167), Bm16Mr45CII = ''Brucella melitensis'' bv. 1 str. 16M chromosome II (NC_003318), BaS19r45CII = ''Brucella abortus'' S19 chromosome 2 (NC_010740), Bm23457r45CII = ''Brucella melitensis'' ATCC 23457 chromosome II (NC_012442), Bs1330r45CII = ''Brucella suis'' 1330 chromosome II (NC_004311), Ba19941r45CII = ''Brucella abortus'' bv. 1 str. 9-941 chromosome II (NC_006933), Bmar45CII = ''Brucella melitensis'' biovar Abortus 2308 chromosome II (NC_007624), Bor45CII = ''Brucella ovis'' ATCC 25840 chromosome II (NC_009504), Bmir45CII = ''Brucella microti'' CCM 4915 chromosome 2 (NC_013118), Oar45C = ''Brucella anthropi'' ATCC 49188 chromosome 2 (NC_009668), MsBNCr45C = ''Mesorhizobium'' sp. BNC1 (NC_008254), Bahr45C = ''Bartonella henselae'' str. Houston-1 (NC_005956), Bacr45C = ''Bartonella clarridgeiae'' 73 (NC_014932), Batr45C = ''Bartonella tribocorum'' CIP 105476 (NC_010161), Baqr45C = ''Bartonella quintana'' str. Toulouse (NC_005955), Babr45C = ''Bartonella bacilliformis'' KC583 (NC_008783), Bagr45C = ''Bartonella grahamii'' as4aup (NC_012846), Ac571r45C = ''Azorhizobium caulinodans'' ORS 571 (NC_009937), Stnr45C = ''Starkeya novella'' DSM 506 chromosome (NC_014217), Xar45C = ''Xanthobacter autotrophicus'' Py2 chromosome (NC_009720), Mesr45C = ''Methylocella silvestris'' BL2 chromosome (NC_011666), Beir45C = ''Beijerinckia indica'' subsp. indica ATCC 9039 chromosome (NC_010581), Rhpr45C = ''Rhodopseudomonas palustris'' BisA53 chromosome (NC_008435).")
αr45 is a family of bacterial small non-coding RNAs with representatives in a broad group of α-proteobacteria from the order Hyphomicrobiales. The first member of this family (Smr45C) was found in a Sinorhizobium meliloti 1021 locus located in the chromosome (C).
Antisense RNA
RNA MOLECULES HYBRIDIZING TO COMPLEMENTARY SEQUENCES IN EITHER RNA OR DAN, ALTERING THE FUNCTION OF THE LATTER
Rna, antisense; Antisense rna; Antisense mRNA; Anti-sense RNA; AsRNA; Antisense gene
Antisense RNA (asRNA), also referred to as antisense transcript, natural antisense transcript (NAT) or antisense oligonucleotide, is a single stranded RNA that is complementary to a protein coding messenger RNA (mRNA) with which it hybridizes, and thereby blocks its translation into protein. asRNAs (which occur naturally) have been found in both prokaryotes and eukaryotes, and can be classified into short (200 nucleotides) non-coding RNAs (ncRNAs).
RNA editing
COVALENT ALTERATION OF ONE OR MORE NUCLEOTIDES WITHIN AN RNA MOLECULE TO PRODUCE AN RNA MOLECULE WITH A SEQUENCE THAT DIFFERS FROM THAT CODED GENETICALLY
RNA Editing; Rna editing; Editosome; RNA modification
RNA editing (also RNA modification) is a molecular process through which some cells can make discrete changes to specific nucleotide sequences within an RNA molecule after it has been generated by RNA polymerase. It occurs in all living organisms and is one of the most evolutionarily conserved properties of RNAs.
